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Architecture Docs → ABIO biology

Generator

Base protocol for synthetic biology factories.

Overview

Generator is the base protocol for factories that produce synthetic biology components matching statistical distributions captured from Earth biochemistry.

Properties Type Description
model BioChemistryModel Statistical distributions to match
seed int Random seed for reproducibility
Methods Description
generate Generate a new instance
generate_batch Generate multiple instances

Protocol Definition

from typing import Protocol, TypeVar, Generic

T = TypeVar("T")

class Generator(Protocol, Generic[T]):
    """Base protocol for biology factories."""

    model: "BioChemistryModel"
    seed: int

    def generate(self) -> T:
        """Generate a new instance."""
        ...

    def generate_batch(self, n: int) -> list[T]:
        """Generate multiple instances."""
        ...

Methods

generate() -> T

Generates a single new instance matching the statistical model.

generate_batch(n) -> list[T]

Generates multiple instances efficiently.

See Also