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Demo Gallery

Interactive demonstrations of AlienBio's core capabilities. Each demo is available in three formats:

  • Notebook — rendered inline below (also downloadable as .ipynb)
  • Script — standalone Python script (.py)
  • Output — pre-generated figures (.png)

Core Demos

01: Quick Start

A 3-molecule homeostatic system (zynol↔brevix↔corthan) converging to equilibrium.

Trajectories Convergence

:material-notebook: Notebook · :material-language-python: Script


02: Equilibrium & Stability

Run to equilibrium and analyze stability using variance over a trailing window.

Trajectories Convergence

:material-notebook: Notebook · :material-language-python: Script


03: Perturbation & Recovery

Spike recovery and reaction-removal drift experiments.

Spike Recovery Drift

:material-notebook: Notebook · :material-language-python: Script


04: Disease Investigation

Apply a perturbation, observe the diseased system, and detect symptoms.

Diseased Trajectories Symptoms

:material-notebook: Notebook · :material-language-python: Script


05: Multi-Compartment Organism

Generate a 3-organ organism and visualize molecule transport across compartments.

Heatmap

:material-notebook: Notebook · :material-language-python: Script


06: Life & Survival

Population dynamics and concentration envelopes.

Population Envelope

:material-notebook: Notebook · :material-language-python: Script


07: Generating & Skinning

Replace real molecule/reaction names with opaque alien terminology at 3 detail levels.

:material-notebook: Notebook · :material-language-python: Script


08: Agent Evaluation

Oracle, random, and zero agents evaluated across difficulty levels.

Difficulty Curves Comparison

:material-notebook: Notebook · :material-language-python: Script


Combo Demos

Disease Investigation (4-Panel)

End-to-end: healthy equilibrium → disease → symptoms → diagnosis.

Four Panel

:material-notebook: Notebook · :material-language-python: Script


Alien Exam

Agents evaluated on skinned (opaque) diagnosis tasks at multiple difficulty levels.

Difficulty Curves Leaderboard

:material-notebook: Notebook · :material-language-python: Script


Ecosystem

Multi-compartment organism heatmap and concentration envelope violations.

Heatmap Envelope

:material-notebook: Notebook · :material-language-python: Script