Demo 05: Multi-Compartment Organism¶

Generate a 3-organ organism and visualize molecule transport across compartments.

In [1]:

import sys
from pathlib import Path

# Ensure alienbio is importable
_root = Path(".").resolve().parent.parent / "src"
if str(_root) not in sys.path:
    sys.path.insert(0, str(_root))
_demos = Path(".").resolve().parent
if str(_demos) not in sys.path:
    sys.path.insert(0, str(_demos))

%matplotlib inline

import sys from pathlib import Path # Ensure alienbio is importable _root = Path(".").resolve().parent.parent / "src" if str(_root) not in sys.path: sys.path.insert(0, str(_root)) _demos = Path(".").resolve().parent if str(_demos) not in sys.path: sys.path.insert(0, str(_demos)) %matplotlib inline

In [2]:

from _core import demo_05_organism
fig = demo_05_organism()

from _core import demo_05_organism fig = demo_05_organism()

Compartment Heatmap¶

Molecule 0 concentration across organs over time.

In [3]:

fig

fig

Out[3]: